Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceVGGLMKKNTLILGIESSCDETAASVVKNGNEIISSVVASQIESHKRFGGVVPEIASRHHVEQITLVIEEALKQANVTMDDLDGVAVTEGPGLVGALLIGVNAAKTLAFMHNLPLVGVHHIAGHIYANRFE-TEFKFPLLSLVVSGGHTELVLMKADNEFEIIGETRDDAAGEAYDKVARTLGLAYPGGVQIDKLAKDGE-DTFHFPRAMMDEGSFDFSFSGLKSSFINTLHNLRQRG-EEPNPNDMAASFQASVVDVLVSKTIRAAKQYDVKQLLLAGGVAANQGLRERLIQEVKLELPETELIIPPLALCGDNAAMIAAAGTVSFLQGKRSGFDMNANPGLLLEDI
4YDU Chain:B ((3-334))----------VLGIETSCDETGIAIYDDEKGLLANQLYSQVKLHADYGGVVPELASRDHVRKTVPLIQAALKESGLTAKDIDAVAYTAGPGLVGALLVGATVGRSLAFAWDVPAIPVHHMEGHLLAPMLEDNPPEFPFVALLVSGGHTQLISVTGIGQYELLGESIDDAAGEAFDKTAKLLGLDYPGGPLLSKMAAQGTAGRFVFPRPMTDRPGLDFSFSGLKTFAANT---IRDNGTDDQTRADIARAFEDAVVDTLMIKCKRALDQTGFKRLVMAGGVSANRTLRAKLAEMMKKRRGEVFYARP--EFCTDNGAMIAYAGMVRFKAGATADLGVSVRPRWPLAEL


General information:
TITO was launched using:
RESULT:

Template: 4YDU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -185747 for 3024 contacts (-61.4/contact) +
2D Compatibility (PS) -34949 + (NN) -9215 + (LL) 684
1D Compatibility (HY) -25600 + (ID) 7200
Total energy: -262027.0 ( -86.65 by residue)
QMean score : 0.499

(partial model without unconserved sides chains):
PDB file : Tito_4YDU.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4YDU-query.scw
PDB file : Tito_Scwrl_4YDU.pdb: