Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MWRLTGNSSLPIYLQIVDLIETKIMNGELLPEEKLPPERQLAEMFGVNRSTVVRALDELTARAVIIRKQGSGTTVNAEKWGLFAGQSTNWRHYLTQGGFTPAVPYIRQAGVMERANSDNVIDAASGELPLEMTPKMETPSLSWQSFIAEEQQEDEAGYKPLRETIQKQMKEAYGLQTRSEQIFITSGAQQALFLITQCLLKPGDAVAIESPSYFYSLSLFQSAGLRIFALPMDEDGVVIS----ELRDLYHK-HRVKMVFVNPTFQNPTGLVMSLKRRKELVKICAHLQIPIVEDDPFSELGALDNQIPAPLKRLDTDN-VLYIGSLSKIMGSTTRIGWLIGPTAVIERLALARQEMDFGLSIFPQVLANSVLNTAGYKAHLLQLHHVLEQRRDDLIEAFEAILPSEVTFIKPKGGFHLWVKLPVEFRSVRDFDIFLANDLLVMPGFLFGVKEAV-----IRVTYARLEK--KEARRVAEIIKQILVSKKCEEA |
3AV7 Chain:C ((119-446)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------GFTPLRETLMKWLGKRYGI-SQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNP-EKKIKALDNEGRVIYLGTFSKILAPGFRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPDGIDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRLAETIKEEL-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3AV7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -217213 for 2638 contacts (-82.3/contact) +
2D Compatibility (PS) -34813 + (NN) -20356 + (LL) 11984
1D Compatibility (HY) -29600 + (ID) 5550
Total energy: -295548.0 ( -112.03 by residue)
QMean score : 0.518
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