Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDVLTLLRNHRSFRKYKKGVEIPEEKLDAIIRAAQAAPSWINGQHYSIIAIKDQERKNKMAELCGNQPYIAECSVFLCFVADFHR-VKVASDMHGKSFQIAGEEDLLMVAATDIGLCMQNALTAAESLDYGTICIGGLRRNITATAGFLNLPEFVMPVVGLCIGVPDVEAPVKPRLPKEAVYFEETYQTDVMPLLEAYDQEIIPFSEREGFVSYTERLAKFYDRPYYPNLTEQIKERGFLGGK
1BKJ Chain:B ((2-205))
-NNTIETILAHRSIRKFT-AVPITDEQRQTIIQAGLAASSSSMLQVVSIVRVTDSEKRNELAQFAGNQAYVESAAEFLVFCIDYQRHATINPDVQ------ADFTELTLIGAVDSGIMAQNCLLAAESMGLGGVYIGGLRNSAAQVDELLGLPENSAVLFGMCLGHPDQNPEVKPRLPAHVVVHENQYQELNLDDIQSYDQTM-----------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1BKJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146619 for 1361 contacts (-107.7/contact) +
2D Compatibility (PS) -21548 + (NN) -9504 + (LL) 2776
1D Compatibility (HY) -12800 + (ID) 3600
Total energy: -191295.0 ( -140.55 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_1BKJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BKJ-query.scw
PDB file :
Tito_Scwrl_1BKJ.pdb
: