Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNEAVKTLDGWFCLHDFRSIDWAAWRELNPGNQELMLNELSHFLSDMEITKNIGEGEHTIYSILGQKADLVFFTLRDSLEALNEVENRFNKLAIADYLLPTYSYISVVELSNYLASHMAGGDDPYQNKGVRARLYPALPPKKHICFYPMSKKRDGADNWYMLPMEERQQLIRDHGLIGRSYAGKVQQIIGGSIGFDDYEWGVTLFSDDALEFKRIVTEMRFDEASARYAEFGSFFIGNLLLSEQLSKLFTI
4WWS Chain:D ((9-253))
------TLDGWFCLHDFRSIDWAAWRELNPGNQELMLNELSHFLSDMEITKNIGEGEHTIYSILGQKADLVFFTLRDSLEALNEVENRFNKLAIADYLLPTYSYISVVELS----------DDPYQNKGVRARLYPALPPKKHICFYPMSKKRDGADNWYMLPMEERQQLIRDHGLIGRSYAGKVQQIIGGSIGFDDYEWGVTLFSDDALEFKRIVTEMRFDEASARYAEFGSFFIGNLLLSEQLSKLFTI
General information:
TITO was launched using:
RESULT:
Template:
4WWS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133911 for 1750 contacts (-76.5/contact) +
2D Compatibility (PS) -25561 + (NN) -14239 + (LL) 988
1D Compatibility (HY) -36400 + (ID) 11750
Total energy: -220873.0 ( -126.21 by residue)
QMean score : 0.562
(partial model without unconserved sides chains):
PDB file :
Tito_4WWS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WWS-query.scw
PDB file :
Tito_Scwrl_4WWS.pdb
: