Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFTKKRGLMLLAAVLLTVCAIWEYAMPTDAAVKSYYVKVEDAGKPVQKNQFKGFKYVSNVYDDKGKQKQLTFYSEKELTKNEQFKVLVGENKMVVNYKKIK--NVPDKIKYLAEK
3NPP Chain:A ((3-84))
------------------------FNPFIH-QQDVYVQIDRDGRHL---SPGGTEYTLDGYNASGKKEEVTFFAGKELRKNAYLKVKAKG-KYVETWEEVKFEDMPDSVQS----
General information:
TITO was launched using:
RESULT:
Template:
3NPP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8816 for 487 contacts (-18.1/contact) +
2D Compatibility (PS) -8176 + (NN) 2815 + (LL) 3672
1D Compatibility (HY) -3600 + (ID) 1150
Total energy: -15255.0 ( -31.32 by residue)
QMean score : 0.593
(partial model without unconserved sides chains):
PDB file :
Tito_3NPP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NPP-query.scw
PDB file :
Tito_Scwrl_3NPP.pdb
: