Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKLNGKVAVVTGAASGMGQQIAILFAKEGAKVVVADLNLEAAQKTVELVEKEHGTG---LAVVANVTKQEDIENMINQAIEAFGTLDILVNNAGIMDNFVPAGELTDELWDKVFAINTTGVMRATREALHIFEEKGQGVIVNIASAGGLFGSRAGAAYTASKHAVVGFTKNVGFQYANKNIRCNAIAPGAVNTNIGTTIYAPDEFGQERAMIGMGINPRAGDASEIAKVALFLASDDSSFVNGTVITADAGWTAY
4FN4 Chain:C ((5-252))
---LKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVEL-LE--DRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMSLSSRLAEPEDIANVIVFLASDEASFVNGDAVVVDGGLT--
General information:
TITO was launched using:
RESULT:
Template:
4FN4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130352 for 2209 contacts (-59.0/contact) +
2D Compatibility (PS) -27006 + (NN) -10871 + (LL) 544
1D Compatibility (HY) -19200 + (ID) 5050
Total energy: -191935.0 ( -86.89 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_4FN4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FN4-query.scw
PDB file :
Tito_Scwrl_4FN4.pdb
: