Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYPQLSKEVAPNEIEAEMITNRGTIRIKLFPEIAPKTVENFVTHSKNGYYDGLIFHRVIPEFMIQGGDPDGRGTGGESIWGESFEDEFSTE-AFNLRGALSMANAGPNTNGSQFFIVQKPDMPADMLGQMEQAGFPVEVIEAYKQGGTPWLDGRHTVFGHVIEGMDVVDEIANLPTGMQD-KPVNDVVIEKINIK
2OJU Chain:B ((7-160))
--------------MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFIT---------------------------YGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI-
General information:
TITO was launched using:
RESULT:
Template:
2OJU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65744 for 1150 contacts (-57.2/contact) +
2D Compatibility (PS) -15866 + (NN) -4309 + (LL) 2860
1D Compatibility (HY) -13200 + (ID) 3950
Total energy: -100209.0 ( -87.14 by residue)
QMean score : 0.590
(partial model without unconserved sides chains):
PDB file :
Tito_2OJU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OJU-query.scw
PDB file :
Tito_Scwrl_2OJU.pdb
: