Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKNYKAYLIDLDGTMYRGAEVIPEAIIFIENLKRAGLPYLFVTNNSTKTPGQVAEHL-TDMGIQAVSDDVFTTSQATVQFMMEQKREKTVYVIGERGIKQELTDNGFEITSSNPAFVVVGLDREVDYEKFSKAALAVRGGAMFISTNGDAAIPTERGLLPGNGSITSVVSVATETAPIFIGKPESIIMEQALAKLGVHKDEAIMVGDNYETDIMAGINYGMDTLIVHTGFTSKEALLTKEIQPTYAVTKLTDWEFN
1YV9 Chain:B ((4-256))
--DYQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDIHVPASLVYTATLATIDYMKEANRGKKVFVIGEAGLIDLILEAGFEWDETNPDYVVVGLDTELSYEKVVLATLAIQKGALFIGTNPDKNIPTERGLLPGAGSVVTFVETATQTKPVYIGKPKAIIMERAIAHLGVEKEQVIMVGDNYETDIQSGIQNGIDSLLVTSGFTPKSAVPTLPTPPTYVVDSLDEWTF-
General information:
TITO was launched using:
RESULT:
Template:
1YV9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150559 for 2176 contacts (-69.2/contact) +
2D Compatibility (PS) -27477 + (NN) -11859 + (LL) 160
1D Compatibility (HY) -27200 + (ID) 6600
Total energy: -223535.0 ( -102.73 by residue)
QMean score : 0.635
(partial model without unconserved sides chains):
PDB file :
Tito_1YV9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YV9-query.scw
PDB file :
Tito_Scwrl_1YV9.pdb
: