Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLPKDLLYTEEHEWVKADDGSYVIGITDFAQDQLGDIVFVELPEVGDTVTKGDSIGSIESVKTVSDFYAPVTGKVVAVNETLEDEPELINSNPYDTGWILKLEEVEEADVKALLSSDDYEKVLD
1DXM Chain:B ((7-125))
------LKYAPSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSPDELESLLGAKEYTKFCE
General information:
TITO was launched using:
RESULT:
Template:
1DXM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46863 for 926 contacts (-50.6/contact) +
2D Compatibility (PS) -12561 + (NN) -959 + (LL) 204
1D Compatibility (HY) -10800 + (ID) 2800
Total energy: -73779.0 ( -79.67 by residue)
QMean score : 0.650
(partial model without unconserved sides chains):
PDB file :
Tito_1DXM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DXM-query.scw
PDB file :
Tito_Scwrl_1DXM.pdb
: