Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LRRLDRFNAPDDTVNTLFQVYKTISFWKVLKNTLVIEFGRFFPWMGGKRKIYRVCLGMEIGEKTAIAYKVMPDLFFPEKILIGENSIIGYHTTILTHEYLLSEY-------RVGEVVIGRDVMVGANVTILPGTVIGDGAVIAAGAVVSVDVPAGSFAYGNPLIIKEKATLT
3V4E Chain:B ((97-186))
------------------------------------------------------------------------------QITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVVRK----
General information:
TITO was launched using:
RESULT:
Template:
3V4E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76627 for 574 contacts (-133.5/contact) +
2D Compatibility (PS) -9223 + (NN) -3088 + (LL) 6436
1D Compatibility (HY) -5200 + (ID) 1650
Total energy: -89352.0 ( -155.67 by residue)
QMean score : 0.457
(partial model without unconserved sides chains):
PDB file :
Tito_3V4E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V4E-query.scw
PDB file :
Tito_Scwrl_3V4E.pdb
: