Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPIVNMTDMLKKALAGKYAVGQFNINNLEWTQAILKAAEAEKAPVILGVSEGAAKYMGGFKTVVKMTEGLVEDLKITVPVAIHLDHGSSFDSCKAAIDAGFSSVMIDGSHHPIDENIAMTKQVVDYAHAKGVSVEAEIGTVGGDEDGVTGGINYADPQECLRVVKEANIDALAAALGSVHGPY----HGEPVLGFDEMKEISELTGAPLVLHGGS---------------------GIPEHQIKKAIELGHSKINVNTECQIVWTAAVREKLATDDKVYDPRKVIGPGVDAIIKTVTEKIQEFGSNGKA
3GAK Chain:B ((2-307))-PLCTLRQMLGEARKHKYGVGAFNVNNMEQIQGIMKAVVQLKSPVILQCSRGALKY-SDMIYLKKLCEAALEK-HPDIPICIHLDHGDTLESVKMAIDLGFSSVMIDASHHPFDENVRITKEVVAYAHARGVSVEAELG---------------TEPQDAKKFVELTGVDALAVAIGTSHGAYKFKSE----LAIDRVKTISDLTGIPLVMHGSSSVPKDVKDMINKYGGKMPDAVGVPIESIVHAIGEGVCKINVDSDSRMAMTGAIRKVFVEHPEKFDPRDYLGPGRDAITEMLIPKIKAFGSAGHA


General information:
TITO was launched using:
RESULT:

Template: 3GAK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124885 for 2295 contacts (-54.4/contact) +
2D Compatibility (PS) -29392 + (NN) -13660 + (LL) 372
1D Compatibility (HY) -22800 + (ID) 6400
Total energy: -196765.0 ( -85.74 by residue)
QMean score : 0.604

(partial model without unconserved sides chains):
PDB file : Tito_3GAK.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3GAK-query.scw
PDB file : Tito_Scwrl_3GAK.pdb: