Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEKQVALYIAVSLDGYIADENGSVEWLE----SIDSEGDAGYEAFFDNVDTVVMGRTTYQQIFS-LT-DTFPYSKKDVYVFSNTKAGTKDEYADFVAGTVDTWLNNID---GEKIWLVGGAKLVQQFLKERAIDRFVITIAPIILGKGIPLFEEDQ-EHALELEEVTRFGQFAQLTYKNLEEN
3JTW Chain:A ((3-178))
--ARKVILFIAMSIDNYIADDQGAVDWLEKNVHGTES--DDSYEKMYSKIDTVIMGRTTYEQVTQKLSPEKYVYADRQTYIVTSHLGEDTD-KIKYWKQSPVELVKRIQKEKGKDVWIVGGAKIIDPLVQANLIDTYILTTVPIFLGSGIRLFDRLEEQVPVRLIDVYQKNELVYSIYQRG---
General information:
TITO was launched using:
RESULT:
Template:
3JTW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119195 for 1197 contacts (-99.6/contact) +
2D Compatibility (PS) -17947 + (NN) -3895 + (LL) 344
1D Compatibility (HY) -18000 + (ID) 2750
Total energy: -161443.0 ( -134.87 by residue)
QMean score : 0.441
(partial model without unconserved sides chains):
PDB file :
Tito_3JTW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JTW-query.scw
PDB file :
Tito_Scwrl_3JTW.pdb
: