Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDGFELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR---SNQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIWQRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIV-TVRGVGYKLEETR
1YS6 Chain:B ((27-230))
--------------------LRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKL-EAGGGPRLLHTVRGVGFVL----
General information:
TITO was launched using:
RESULT:
Template:
1YS6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96829 for 1585 contacts (-61.1/contact) +
2D Compatibility (PS) -21539 + (NN) -9773 + (LL) 2132
1D Compatibility (HY) -14800 + (ID) 3600
Total energy: -144409.0 ( -91.11 by residue)
QMean score : 0.403
(partial model without unconserved sides chains):
PDB file :
Tito_1YS6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YS6-query.scw
PDB file :
Tito_Scwrl_1YS6.pdb
: