Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLHELKPSEGSRKERNRVGRGTGSGNGKTSGRGHKGQKARSGGGVRLGFEGGQLPLFRRIPKRGFTNINRKEFAIVNLDVLN-RFEDGTEVTPELLVETGIIRNEKSGIKILSNGNIEKKLTVKANKFSAAAKEAIEAAGGKTEVI
1VQ8 Chain:O ((28-99))
------------------------------------------------------GDVAERLEKP------RRTHAEVNLGRIERYAQEDETVV--------------VPGKVLGSGVLQKDVTVAAVDFSGTAETKIDQVGEAVSL-
General information:
TITO was launched using:
RESULT:
Template:
1VQ8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12998 for 485 contacts (-26.8/contact) +
2D Compatibility (PS) -7927 + (NN) -2671 + (LL) 1656
1D Compatibility (HY) -2800 + (ID) 1000
Total energy: -25740.0 ( -53.07 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_1VQ8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VQ8-query.scw
PDB file :
Tito_Scwrl_1VQ8.pdb
: