Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VIRFFKIVTPILLSISLVACSSASGKTEKITAPIEKDRNLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVESKKTDVLIISGDLTNNGEK---TSHEELAKKLTQVEKNGTQVFVVPGNHDINNPWARKFEKDKQLPTDTISPTDFSKIYGDFGYEDAIS-SDEFSLSYLAAPSSKVWLLMLDTAIYKTNMQQ----------------------------------GNPTTEGGLTAGTLDWIKESSALAKKNGAKLIPVLHHNLTDHNDVIQKGYTINYNQQVIDALTEG-AMDFSLSGHIHTQNIRSAKSTDGKEITDIVTNALSVF---PHKYGNITYSAKNKNFTYQSQKLDMEAWAKAQGSTDENLLNFDQFDYETFYNSGYDKAMMDLMTDESYDKYNQADKEKMADTMGLNNMYFFAGTAPPKSDGMALWDSAPNSFLKDYVLSSSNPPKKSNDYYVSP |
| 2NXF Chain:A ((3-304)) | ------------------------------------DPVFTFGLIADVQYADIED---GENYLRT----RRRYYRGSADLLRDAVLQWRRERVQCVVQLGDIIDGHNRRRDASDRALDTVMAELDACSVDVHHVWGNHEFYNFSRPSLLSS-----------RLNS-AQ------GSDLIGDDIYAYEFSPAPNFRFVLLDAYDLSVIGREEESEKHTHSWRILTQHNHNLQDLNLPPVSVGLEQRFVKFNGGFSEQQLQWLDAVLTLSDHKQERVLIFSHLPVHPCAAD--PICLAWNHEAVLSVLRSHQSVLCFIAGHDHDGGRCTDS----SGAQHITLEGVIETPPHSHAFATAYLYED-------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2NXF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -46630 for 2241 contacts (-20.8/contact) +
2D Compatibility (PS) -27736 + (NN) -10754 + (LL) 9264
1D Compatibility (HY) -8800 + (ID) 1650
Total energy: -86306.0 ( -38.51 by residue)
QMean score : 0.379
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