Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LKAVVKTNPGYDQMELKDVEEPQVYGDKVKIKVAFTGICGSDIHTFK-GEYKNP--TTPVTLGHEFSGVVVEVGPDVTSIKVGDRVTSETTFETCGECIYCKEHDYNLCSNRRGIGTQANGSFAEFVLSREESCHVLDERISLEAAALTEPLACCVHSALEKTTIRPDDTVLVFGPGPIGLLLAQVVKAQGATVIMAGITKDSD-RLRLAKELGMDRIVDTLKEDLAEVVLGMTGGYGAERVFDCSGAVPAVNQGLPLTKKKGDFVQVGLFAEKKNAIDEESII---QREIAYIGSRSQKPSSWILALDLLANGKIDTDKMITKVY-GLDDWREAFEAVMAGNEIKVLVKS |
| 3GFB Chain:C ((5-344)) | MQAIMKTKPAYGA-ELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEVGPGVEDLQVGDYISVETHI-VCGKCYACKHNRYHVCQNTKIFGVDMDGVFAHYAIVPAKNAWKNPKDMPPEYAALQEPLGNAVDTVLAGPIA--GRSTLITGAGPLGLLGIAVAKASGAYPVI--VSEPSEFRRKLAKKVGADYVVNPFEEDPVKFVMDITDGAGVEVFLEFSGAPKALEQGLKAVTPGGRVSLLGLFP-REVTIDFNNLIIFKALEVHGITGRHLW-ETWYTVSSLIQSGKLNLDPIITHKYKGFDKFEEAFELMRAGKTGKVV--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3GFB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -162208 for 2875 contacts (-56.4/contact) +
2D Compatibility (PS) -35518 + (NN) -13314 + (LL) 436
1D Compatibility (HY) -21600 + (ID) 6000
Total energy: -238204.0 ( -82.85 by residue)
QMean score : 0.422
|
|
|