Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTIMLVCSAGM-STSLLVTKMEKAAEAQGIEAKIFAVAEAEAANHLDEIDVLLLGPQVRFLEGNMKKKLEPKGIPLAVINSVDYGM-MKGDKVLEQALELMK
1TVM Chain:A ((21-112))
KRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTARVDRSF---------GDIPLVHGMP--FVSGVGIEALQNKILTILQ
General information:
TITO was launched using:
RESULT:
Template:
1TVM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69615 for 575 contacts (-121.1/contact) +
2D Compatibility (PS) -9662 + (NN) -2516 + (LL) 404
1D Compatibility (HY) -5600 + (ID) 500
Total energy: -87489.0 ( -152.15 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_1TVM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TVM-query.scw
PDB file :
Tito_Scwrl_1TVM.pdb
: