Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLIFAIVQDQDSNRLSDALTKGNFGATKLATTGGFLKAGNTTFIIGTEDERVEDALAIIKENCKAREQMMTPSASLGVTVDTYVPYPIEVQVGGATVFVMPVESFHHF
4RWW Chain:B ((1-109))
MKLIFAIVQDQDSNRLSDALTKGNFGATKLATTGGFLKAGNTTFIIGTEDERVEDALAIIKENCKAREQMMTP------TVDTYVPYPIEVQVGGATVFVMPVESFHHF
General information:
TITO was launched using:
RESULT:
Template:
4RWW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60313 for 667 contacts (-90.4/contact) +
2D Compatibility (PS) -11479 + (NN) -4863 + (LL) 284
1D Compatibility (HY) -14400 + (ID) 5100
Total energy: -95871.0 ( -143.73 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_4RWW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RWW-query.scw
PDB file :
Tito_Scwrl_4RWW.pdb
: