Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MERAFFMQQALEEAEKARDIGEVPIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPCPMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVEAGLMESESSEMLKSFFQELRKRNKSNRS
2B3J Chain:C ((9-155))
----YFMTLAIEEAKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLRANK-----
General information:
TITO was launched using:
RESULT:
Template:
2B3J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77710 for 1247 contacts (-62.3/contact) +
2D Compatibility (PS) -16193 + (NN) -8170 + (LL) 584
1D Compatibility (HY) -14800 + (ID) 4050
Total energy: -120339.0 ( -96.50 by residue)
QMean score : 0.599
(partial model without unconserved sides chains):
PDB file :
Tito_2B3J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2B3J-query.scw
PDB file :
Tito_Scwrl_2B3J.pdb
: