Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VEIKQIKAKDTQDIRHRVLRPEQPEENA-IYPNDDMEGTFHLGAFEKDVLLGVASFYPEKSTVIMNPAQYRIRGV-ATERRMRLKGLGTALLAEGEAEIWTRGADIIWCNARIVAVGFYEKHGYRKVGKSFVIPGIGEHYL-MKKVNPNKKVDQDN
2BSW Chain:A ((2-146))
IEVKPINAEDTYELRHRILRPNQPIEACMF-ESDLLRGAFHLGGYYGGKLISIASFHQAEHSELQGQKQYQLR-GMATLEGYREQKAGSSLIKHAEEILRKRGADLLWCNARTSASGYYKKLGFSEQGEVFDTPPVGPHILMYKRIT---------
General information:
TITO was launched using:
RESULT:
Template:
2BSW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46912 for 1059 contacts (-44.3/contact) +
2D Compatibility (PS) -14841 + (NN) -2407 + (LL) -92
1D Compatibility (HY) -8400 + (ID) 2750
Total energy: -75402.0 ( -71.20 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_2BSW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BSW-query.scw
PDB file :
Tito_Scwrl_2BSW.pdb
: