Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VILIIDHNDSFTYNLYQYFLELQEEVQVVSATSFSLEAFQQLAPEMVVLSPGPGSPEDF-PVSLALLGK--I-QVPILGICLGHQIIGHFFGAKVVPANVPVHGKTSVISH-TGEGLFADLEPAFQVTRYHSLVIDPTTVPVNLKVTAVTEDGVIMGLVHATKPIHSVQFHPEAILSENGHAILKNFVRLGRNVK
2A9V Chain:A ((15-203))
KIYVVDNGGQWTHREWRVLRELGVDTKIVPNDI-DSSEL--DGLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPILGICVGAQFIALHFGASVVKAKHPEFGK-TKVSVMHSENIFGGLPSEITVWENHNDEII--NLPDDFTLAASSATCQVQGFYHKTRPIYATQFHPEVEHTQYGRDIFRNFIGICASYR
General information:
TITO was launched using:
RESULT:
Template:
2A9V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137333 for 1570 contacts (-87.5/contact) +
2D Compatibility (PS) -19763 + (NN) -10393 + (LL) 336
1D Compatibility (HY) -8400 + (ID) 2550
Total energy: -178103.0 ( -113.44 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_2A9V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2A9V-query.scw
PDB file :
Tito_Scwrl_2A9V.pdb
: