Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLENDIKKVLYSEEDIILKTKELGAKLTADYAGKNPLLVGVLKGSVPFMAELLKHIDTHVEIDFMVVSSYHGGTTSSGEVKILKDVDTNIEGRDVIFIEDIIDTGRTLKYLRDMFKYRQANSVKVATLFDKPEGRLVDIDADYVCYDIPNEFIVGFGLDYAENYRNLPYVGVLKEEIYSK
3KB8 Chain:C ((25-203))
MMNQDIEKVLISEEQIQEKVLELGAIIAEDYKNTVPLAIGVLKGAMPFMADLLKRTDTYLEMDFMAVSSYGHSTVSTGEVKILKDLDTSVEGRDILIVEDIIDSGLTLSYLVDLFKYRKAKSVKIVTLLDKPTGRKVDLKADYVGFTVPHEFVVGYGLDYKEQYRNLPYVGVLKPSVYS-
General information:
TITO was launched using:
RESULT:
Template:
3KB8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122142 for 1393 contacts (-87.7/contact) +
2D Compatibility (PS) -19563 + (NN) -7668 + (LL) 64
1D Compatibility (HY) -23600 + (ID) 5600
Total energy: -178509.0 ( -128.15 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_3KB8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KB8-query.scw
PDB file :
Tito_Scwrl_3KB8.pdb
: