Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPHLSKEAFKKQIKNGIIVSCQALPGEPLYTESGGVMPLLALAAQEAGAVGIRANSVRDIKEIQEVTNLPIIGIIKREYPPQEPFITATMTEVDQLASLDIAVIALDCTLRERHDGLSVVEFIQKIKRKYPEQLLMADISTFEEGKNAFEAGVDFVGTTLSGYTDYSRQEEGPDIELLNKLCQA-GIDVIAEGKIHTPKQANEINHIGVAGIVVGGAITRPKEIAERFISGLS
4UTT Chain:D ((14-225))
------------VKGNLIVSCQALSDEPLH--SSFIMGRMAIAAKQGGAAAIRAQGVNDINEIKEVTKLPIIGIIKRNYDDSEIYITPTMKEVDELLKTDCEMIALDATKRKRPNGENVKDLVDAIHAK--GRLAMADISTLEEGIEAEKLGFDCVSTTLSGYTPYSKQSNSVDFELLEELVKTVKIPVICEGRINTPEELKKALDLGAYSAVVGGAITRPQQITKRFTDIL-
General information:
TITO was launched using:
RESULT:
Template:
4UTT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131425 for 1818 contacts (-72.3/contact) +
2D Compatibility (PS) -22704 + (NN) -10777 + (LL) 1264
1D Compatibility (HY) -18800 + (ID) 5500
Total energy: -187942.0 ( -103.38 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_4UTT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4UTT-query.scw
PDB file :
Tito_Scwrl_4UTT.pdb
: