Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVRGFELVSQFSNKELLPKRETAHAAGYDLKVA----KKTVIEPGEITLVPTGIKAHMQPGEVLYLYDRSSNPRKKGIVLINSVGVIDGDYYNNQVNEGHIFAQMQNITDQAVILEEGERIVQAVFAPFLLADDDQ--ATGMRTGGFGSTGK
3MBQ Chain:B ((45-160))
------------------LPAYETAGSAGMDLRAAVAEDRQIVLLPGRRTLVPTGLILEIPQGYEVQIRPRSGLAFKNGITCLNTPGTIDSDY------RGEVKVLLINLGDDDFRIERGMRIAQAVFAPVIQPKIEERA--------------
General information:
TITO was launched using:
RESULT:
Template:
3MBQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54414 for 726 contacts (-75.0/contact) +
2D Compatibility (PS) -11727 + (NN) -1826 + (LL) 1616
1D Compatibility (HY) -5600 + (ID) 2200
Total energy: -74151.0 ( -102.14 by residue)
QMean score : 0.413
(partial model without unconserved sides chains):
PDB file :
Tito_3MBQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MBQ-query.scw
PDB file :
Tito_Scwrl_3MBQ.pdb
: