Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTYFDNFLKTNQAYADLHGTAHLPIKPKTKVAIVTCMDSRLHVAQALGLDLGDAHILRNAGGRVTDDVLRSLVISQQQLGTREIVVLHHTDCGAQTFTNEAFATQLQRDLGVDMHGHDFLP--FNDIEESVREDVAKLHASPLIPNDVVISGAIYDVDTGRMVEVK
4YF6 Chain:D ((11-170))
--TVTDDYLANNVDYASGF-KGPLPMPPSKHIAIVACMDARLDVYRMLGIKEGEAHVIRNAGCVVTDDVIRSLAISQRLLGTREIILLHHTDCGMLTFTDDDFKRAIQDETGIR---PTWSPESYPDAVEDVRQSLRRIEVNPFVTKHTSLRGFVFDVATGKLNEVT
General information:
TITO was launched using:
RESULT:
Template:
4YF6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77661 for 1065 contacts (-72.9/contact) +
2D Compatibility (PS) -17219 + (NN) -10926 + (LL) 168
1D Compatibility (HY) -14000 + (ID) 3500
Total energy: -123138.0 ( -115.62 by residue)
QMean score : 0.588
(partial model without unconserved sides chains):
PDB file :
Tito_4YF6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YF6-query.scw
PDB file :
Tito_Scwrl_4YF6.pdb
: