Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTKLRRFRFPLRFYFTLMFVLTMLFSVLASLLLVAAIVFTFFQGVLTTHVLQVSALAVVFLSLVIASISMWYGSYHLTKPILDISRIVSNVADGDFEGHIYRNSNRRKSYEYYNELDELSESINQMIVSLSHMDHMRKDFITNVSHELKTPIAAVANIVELLQDP--ELDEETQSELLGLVKTESLRLTRLCDTMLQMSRVDNQETIGELSSVRVDEQIRQAMISLTERWQAKRINFQLDSK---PYTVYSNSDLLMQVWINLLDNAIKYS-DDIVD--LRVRMEETNNHYLRVIISDKGRGISQYDVQHIFDKFYQADQS--HNQQGNGLGLAIVKRIIVLCKGRISVSSQFEIGTEFCVELPLS
4JAV Chain:B ((13-246))---------------------------------------------------------------------------------------------------------------------------------LKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVL-IIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKD


General information:
TITO was launched using:
RESULT:

Template: 4JAV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109464 for 1550 contacts (-70.6/contact) +
2D Compatibility (PS) -24026 + (NN) -11317 + (LL) 12204
1D Compatibility (HY) -19600 + (ID) 3850
Total energy: -156053.0 ( -100.68 by residue)
QMean score : 0.561

(partial model without unconserved sides chains):
PDB file : Tito_4JAV.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4JAV-query.scw
PDB file : Tito_Scwrl_4JAV.pdb: