Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------------------------MLIIELLKALFLGVVEGVTEWLPVSSTGHLILVQEFMKLNQSKSFVEMFNIVIQLGAIMAVIV------I-YFKRL-NPFQ-P-----GKSAREIRLTWQ-LWLKVVI-----ACIPSILIALPFDNWFEAHFN-FMIPIA---IALI-FYGFVFIWVEKRNAHLKPQVTELASMSYK-----------TAFLIGCFQVLSIVPGTSRSGATIL--------GAIIIGTSRSVAADFTFFLAIPTMFGYSGLKAVKYFLDGNVLSLDQSLI----LLVASLTAFVVS-LYVIRFLTDYVKRHDFTIFGKY------------RIVLG-SLLILYWLVVHLF |
| 3FNB Chain:A ((11-402)) | LKRQDYKIKFNNKDMDFCFNWMLGIGQIIGMSAGELFYIASGIRDGNPTDWCKRFNEHADYLEDEVERVKKVGYRDLISHLYFSACFSIRAALQFTDPKDSEFMENFRRMEKLFMLAVDNSKIPLKSIEVPFEGELLPGYAIISEDKAQDTLIVVGGGDTSREDLFYMLGYSGWEHDYNVLMVDLPGQGKNPNQGLHFEVDARAAISAILDWYQAPTEKIAIAGFSGGGYFTAQAVEKDKRIKAWIASTPIYDVAEVFRISFSSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVDYNKIDVPSLFLVGAGEDSELMRQSQVLYDNFKQRGIDVTLRKFSSESGADAHCQVNNFRLMHYQVFEWLNHIFK |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3FNB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -297001 for 2045 contacts (-145.2/contact) +
2D Compatibility (PS) -28995 + (NN) -3200 + (LL) 0
1D Compatibility (HY) 8400 + (ID) 1400
Total energy: -322196.0 ( -157.55 by residue)
QMean score : 0.237
|
|
|