Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKIITSILLLSCIFFMPTISAESFNASAKYALAVDLDSGKILYEKDANRPAAIASLTKIMTVYMVYKEIDNGNLKWNTKVNISDYPYQLTRE--SDASNVPLEKR-RYTVKQLVDAAMISSANSAAIALAEHISGTESKFVDKMTAQLEKWGIHDSHLVNASGLNNSMLGNHIYPKSSQNDENKMSARDIAIVAYHLVNEYPSILKITSKSVAKFDKDIMHSYNYMLPDMPVFRPGITGLKTGTTELAGQSFIATSTESGMRLLTVIMHADKADKDKYARFTATNSLLNYITNTYEPNLVLAKGATYKGKEASVRDGKEQSVIAVAKNDLKVAQKKNITKQNQLKIN-FKKELTAPITKKENLGKAYYVDLNKVGKGYLIKEPSVHLVAKDSIERSFFLKVWWNHFVRYVNEKL |
| 3ITA Chain:A ((5-352)) | --------------------TVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP--------------GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSS---NLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKT----DRIRFNESEKLLTWGFRFFETVTPIKPDATF--VTQRVWFGDKSEVNLGAGEAGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTIDFQLNGK-S---I---EQRPLIVMENVEEGG----------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ITA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -142640 for 2949 contacts (-48.4/contact) +
2D Compatibility (PS) -36261 + (NN) -4647 + (LL) 5116
1D Compatibility (HY) -15200 + (ID) 4400
Total energy: -198032.0 ( -67.15 by residue)
QMean score : 0.504
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