Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDTMILNDNHKIPTLGLGTWMINNDRVAQVVKDAIELGYRHINTAQAYNNEKGVGVGIKESGITRESLFVTTKIAAEHKNYESATKSIDQSLEALGLDCIDLMIIHSPQPWKE-----WRETDKHFDQGNL
3O0K Chain:C ((28-156))
---TVKLNDGNHIPQLGYGVWQISNDEAVSAVSEALKAGYRHIDTATIYGNEEGVGKAINGSGIARADIFLTTKLWNSDQGYESTLKAFDTSLKKLGTDYVDLYLIHWPMPSKDLFMETWRAFIKLKEEGRV
General information:
TITO was launched using:
RESULT:
Template:
3O0K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34884 for 907 contacts (-38.5/contact) +
2D Compatibility (PS) -12907 + (NN) -1261 + (LL) 184
1D Compatibility (HY) -8800 + (ID) 2900
Total energy: -60568.0 ( -66.78 by residue)
QMean score : 0.464
(partial model without unconserved sides chains):
PDB file :
Tito_3O0K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3O0K-query.scw
PDB file :
Tito_Scwrl_3O0K.pdb
: