Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVYENKEELKKEISKTFEKYIMEFNNIPENLKDKRIDEVDRTPAENLSYQVGWTNLVLKWEEDE---RKGLQVKTPSDKFKWNQLGELYQWFTDTYAHLSLQELKAKLNENINSIYAMIDLLSEEELFEAHMRKWADEATKTATWEVYKFIHVNTVAPFGTFRTKIRKWKKIVL
2YQY Chain:A ((9-166))
-----TWDEALKRLEASRKALLALLREADPAWLSAPLREGAWTPLMVAEHVALVEDSTARVLRRLRRLA------------------------------LSLEEVLALLDRARAFLLEEVAKA-DPQNPATFPHPFFG------ELNPLGWLRA-AAYHEAHHLKALQAS-----
General information:
TITO was launched using:
RESULT:
Template:
2YQY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9046 for 854 contacts (-10.6/contact) +
2D Compatibility (PS) -12742 + (NN) -3088 + (LL) 3648
1D Compatibility (HY) 1200 + (ID) 400
Total energy: -20428.0 ( -23.92 by residue)
QMean score : 0.403
(partial model without unconserved sides chains):
PDB file :
Tito_2YQY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YQY-query.scw
PDB file :
Tito_Scwrl_2YQY.pdb
: