Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKQTLKLMFSFLLMLGTMFGISQTVLAQETHQLTIVHLEARDIDRPNPQLEIAPKEGTPI---EGVLYQLYQLKSTEDGDLLAHWNSLTITELKKQAQQV-FEATTNQQGKATFNQLPDG-IYYGLAVKAGEKNR-NVSAFL----VDLSEDKVIY-----P-KIIWSTGELDLLKVGVDGDTKKPLAGVVFELYEKNGRT-PIRV--------------------------------------------------------KNGVHSQDI--D--AAKHLETDSSGHIRISGLIHGDYVLKEIETQSGYQIGQAETAVTIEKSKTVTVTIENKKVPTPKVPSRGGLIPKTGEQQAMALVIIGGILIALALRLLSKHRKHQNKD |
| 2Y1V Chain:A ((327-571)) | -------------------------------------------------------TGAPIPAGAEATFDLVNAQTG---------------------KVVQTVTLTTDKNTVTVNGLDKNTEYKFVER-SIKGYSADYQEITTAGEIAVKNWKDENPKPLDPTEPKVVTYGKKFVKVNDKD---NRLAGAEFVIANADNAGQYLARKADKVSQEEKQLVVTTKDALDRAVAAYNALTAQQQTQQEKEKVDKAQAAYNAAVIAANNAFEWVADKDNENVVKLVSDAQGRFEITGLLAGTYYLEETKQPAGYALLTSRQKFEVTATSYSATGQGIEYTAGSGKDDATKVVNKKITIPQTG-------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y1V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -11968 for 904 contacts (-13.2/contact) +
2D Compatibility (PS) -17530 + (NN) 1381 + (LL) 7732
1D Compatibility (HY) -4400 + (ID) 1650
Total energy: -26435.0 ( -29.24 by residue)
QMean score : 0.353
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