Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKKPIIIGVTGGSGGGKTSVSRAILSNFPDQKITMIEHDSYYKDQSHLTFEERVKTNYDHPLAFDTNLMIEQLNELIEGRPVDIPVYDYTKHTRSDRTIRQDPQDVIIVEGILVLEDQRLRDLMDIKLFVDTDDDIRIIRRIKRDMEERDRSLDSIIEQYTEVVKPMYHQFIEPTKRYADIVIPEGVSNIVAIDLINTKVASILNEAK
3W34 Chain:B ((5-196))
---KPFVIGIAGGTASGKTTLAQALARTL-GERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVPRGGQNPVALEMLAAKALARLAR--
General information:
TITO was launched using:
RESULT:
Template:
3W34.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69915 for 1500 contacts (-46.6/contact) +
2D Compatibility (PS) -20882 + (NN) -8619 + (LL) 356
1D Compatibility (HY) -20800 + (ID) 4800
Total energy: -124660.0 ( -83.11 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_3W34.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3W34-query.scw
PDB file :
Tito_Scwrl_3W34.pdb
: