Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDTLKLYFVCGTVDCSRKNILTVVEEALQAGITLFQFREKGFTALQGKEKIAMAKQLQILCKQYQVPFIIDDDIDLVELIDADGLHIGQNDLPVDEARRRLPDKIIGLSVSTMAEYQKSQLSVVDYIGIGPFNPTQSKADAKPAVGNRTTKAVREINQDIPIVAIGGITSDFVHDIIESGADGIAVISAISKANHIVDATRQLRYEVEKALVNRQKRSDVIK
1G4T Chain:B ((14-227))
MKELLSVYFIMGS-NNTKADPVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFIVNDDVELALNLKADGIHIGQEDANAKEVRAAIGDMILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQAEDPESAARKFREEIQTYKTGR--------
General information:
TITO was launched using:
RESULT:
Template:
1G4T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150588 for 1853 contacts (-81.3/contact) +
2D Compatibility (PS) -24125 + (NN) -16011 + (LL) 832
1D Compatibility (HY) -10400 + (ID) 4500
Total energy: -204792.0 ( -110.52 by residue)
QMean score : 0.654
(partial model without unconserved sides chains):
PDB file :
Tito_1G4T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G4T-query.scw
PDB file :
Tito_Scwrl_1G4T.pdb
: