Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETPLETIYTATMATVDYMNDMNRGKTAYVIGEEGLKKAIADAGYVEDTKNPAYVVVGLDWNVTYDKLATATLAIQNGALFIGTNPDLNIPTERGLLPGAGSLNALLEAATRIKPVFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVEEVPDLPIQPSYVLASLDEWTFNEG
4O8C Chain:B ((10-260))
--YNGYLIDLDGTMYRGTERIDAASGFIKELNRLHIPYLFVTNNSTRTPEQVADKLVSLDIPATPEQIFTSSMATANYVYDLDQNAMIYFIGEEGLYKALKEKGFSFADENADVVIVGLDREVTYEKLAVACLAVRNGAKLISTNGDLALPTERGFMPGNGAFTALISYSTQVKATFVGKPEPIIMEQALKVLGTNKNETIMVGDNYDTDILAGIRAGLDTLLVHTGVTTVEKLKEYKQQPTYSMKSLDDWKFL--
General information:
TITO was launched using:
RESULT:
Template:
4O8C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -168420 for 2211 contacts (-76.2/contact) +
2D Compatibility (PS) -27830 + (NN) -17377 + (LL) 376
1D Compatibility (HY) -27600 + (ID) 6350
Total energy: -247201.0 ( -111.81 by residue)
QMean score : 0.713
(partial model without unconserved sides chains):
PDB file :
Tito_4O8C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4O8C-query.scw
PDB file :
Tito_Scwrl_4O8C.pdb
: