Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLYYFIYLIKVIGNGLKLSLICGLNWLIKIVFKGQFYLFSAVFCGLLTYYMPQDIQLFTVRVLELIIMLKVIIDVTHTALSRDFKRMKTPLFLGVMYVFFLAGNSYIKAHLLTEVMVNHLISFWLISLFFATLVIVIQPRLFKHYLLKKVIDKEYLGIRKFTDSLPPEINLYKDADEEDADKRMRLINQNVIKHPYQEVVELSFLNREVITAIGYKAVPFEKETERTFIDDDTIYYPIFTVHPFRNLEGKSDFYHILMKLKLSRKAAFTKNGERLLIRDF
2QDQ Chain:A ((2496-2529))
-------------------------------------------------------------------------------------------------------------------------------------------------------------GGIAQIIAAQEEMLRKERELEEARKKLAQIRQQQ-----------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2QDQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1495 for 127 contacts (11.8/contact) +
2D Compatibility (PS) -3585 + (NN) 994 + (LL) 23184
1D Compatibility (HY) 1600 + (ID) 400
Total energy: 23288.0 ( 183.37 by residue)
QMean score : 0.362
(partial model without unconserved sides chains):
PDB file :
Tito_2QDQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QDQ-query.scw
PDB file :
Tito_Scwrl_2QDQ.pdb
: