Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLEERILKDGDVLGENILKVDSFLTHQVDFELMQEIGKVFADKYKEAGITKVVTIEASGIAPAVYAAQALGVPMIFAKKAKNITMTEGILTAEVY-SFTKQVTSQVSIVSRFLSNDDTVLIIDDFLANGQAAKGLLEIIGQAGAKVAGIGIVIEKSFQDGRDLLEKTGVPVTSLARIKAFENGRVVFAEADA
1P4A Chain:D ((95-241))
-----ERILPGGYVYLTDILGKPSVLS---------KVGKLFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVRKD------EGSTVSINYVSGSSNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIGVLVEAEGVDERLVDEYMSLLTLSTINMKEKSIEIQNGNFLRF
General information:
TITO was launched using:
RESULT:
Template:
1P4A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97913 for 1084 contacts (-90.3/contact) +
2D Compatibility (PS) -15379 + (NN) -2675 + (LL) 2248
1D Compatibility (HY) -12800 + (ID) 2550
Total energy: -129069.0 ( -119.07 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_1P4A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1P4A-query.scw
PDB file :
Tito_Scwrl_1P4A.pdb
: