Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIMDKSIPKATAKRLSLYYRIFKRFNTDGIEKASSKQIADALGIDSATVRRDFSYFGELGRRGFGYDVKKLMNFFAEILNDHSTTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPSTEAQEVADILVKAGIKGILSFSPVHLTLPKDIIVQYVDLTSELQTLLYFMNQQR
3KEO Chain:B ((6-212))
-----SIPKATAKRLSLYYRIFKRFNTDGIEKASSKQIADALGIDSATVRRDFSYFGELGRRGFGYDVKKLMNFFAEILNDHSTTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPSTEAQEVADILVKAGIKGILSFSPVHLTLPKDIIVQYVDLTSELQTLLYFMNQQR
General information:
TITO was launched using:
RESULT:
Template:
3KEO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156441 for 1483 contacts (-105.5/contact) +
2D Compatibility (PS) -22776 + (NN) -10950 + (LL) 608
1D Compatibility (HY) -30800 + (ID) 10350
Total energy: -230709.0 ( -155.57 by residue)
QMean score : 0.633
(partial model without unconserved sides chains):
PDB file :
Tito_3KEO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KEO-query.scw
PDB file :
Tito_Scwrl_3KEO.pdb
: