Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRKVRRHFTDDFKQQIVDLYNVGRKRSSLIKEYELTPSTFDKWVRQAKTTGSFKSVDNLTDEQRELIELRKHNKELEMQLDILKQAAVIMAQKGK
2K27 Chain:A ((23-70))
-----GRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLA
General information:
TITO was launched using:
RESULT:
Template:
2K27.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7260 for 257 contacts (-28.2/contact) +
2D Compatibility (PS) -4892 + (NN) 1010 + (LL) 536
1D Compatibility (HY) -3200 + (ID) 550
Total energy: -14356.0 ( -55.86 by residue)
QMean score : 0.592
(partial model without unconserved sides chains):
PDB file :
Tito_2K27.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K27-query.scw
PDB file :
Tito_Scwrl_2K27.pdb
: