Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRKEIIDDVTMKRAITRITYEIIERNKNLDNIVLAGIKTRGVFLAKRIQERLKQLENLDIPVGELDTKPFRDDMKVEVDTTTMPVDITDKDIILIDDVLYTGRTIRAAIDNLVSLGRPSRVSLAVLIDRGHRELPIRADYVGKNIPTSQFEEILVEVMEHDGYDRVSIIDPS
4P81 Chain:C ((8-179))
-----VLDEQAIRRALTRIAHEIIERNKGVDNCVLVGIKTRGIYLAKRLAERIEQIEGKKVPVGELDITLY--------KGTDIPVDITDKKVILVDDVLYTGRTVRAAMDALMDLGRPSQIQLAVLVDRGHRELPIRADYVGKNVPTSKSERIVVQLSEVDGQDRVSIYE--
General information:
TITO was launched using:
RESULT:
Template:
4P81.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111058 for 1271 contacts (-87.4/contact) +
2D Compatibility (PS) -17210 + (NN) -3755 + (LL) 1080
1D Compatibility (HY) -19200 + (ID) 5050
Total energy: -155193.0 ( -122.10 by residue)
QMean score : 0.589
(partial model without unconserved sides chains):
PDB file :
Tito_4P81.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P81-query.scw
PDB file :
Tito_Scwrl_4P81.pdb
: