Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLHFENDYNKGAHPELLNALIETNDQGLSGYGTDSYCQQAADKIREVCSCPQAEVEFLVGGTQTNQVVISSMLASYEGVIAAETGHVSSHEAGAIEFSGHKVLTLPSHNGKLLASEVATYIETFYADGNYQHMVFPGMVYISHPTEYGTLYSKAELEELSKICKHYQIPLFIDGARLGYGLAAK--DTDVDFPTIAALSDVFYIGGTKMGALAGEAVVFTKKNRPKQFTTIVKQHGALLAKGRLLGLAFDRFFTDDLYLKIGKHAIDLAEELKIILE-EKGYSFYLKSPTNQQFVIVENTKLTDLA-K-NVAYSFWEKYDDHHTVIRLATSWSTSREDVTALRNVL |
1SVV Chain:A ((15-351)) | PYSFVNDYSVGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLRVADIESALHEN----RSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLAD--IARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEAC-GIRLAWPSASNQLFPILENTMIAELNNDFDMYTVE--PLKDGTCIMRLCTSWATEEKECHRFVEVL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SVV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -239071 for 2876 contacts (-83.1/contact) +
2D Compatibility (PS) -36365 + (NN) -16484 + (LL) 224
1D Compatibility (HY) -25200 + (ID) 6800
Total energy: -323696.0 ( -112.55 by residue)
QMean score : 0.652
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