Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFIFKRKKQVEMPLEKIPAHIGIIMDGNGRWAKKRLKPRVMGHKAGMDALQEVTIAASGLGVKVLTVYAFSTENWSRPDDEVKFIMNLPVEFFDKYVPELDKNNVRVQVIGDTHKLPKATYDAMQRACLRTKHNSGLVLNFALNYGGRSEITNAIKEIAQDVLEAKLNPDDITEDLVANHLMTNSLPYLYRDPDLIIRTSGELRLSNFLPWQSAYSEFYFTPVLWPDFKKDELHKAIVDYNQRHRRFGSV
4Q9M Chain:B ((12-239))
--------------Q-VPAHIGIIMDGNGRWAKKRMQPRVFGHKAGMEALQTVTKAANKLGVKVITVYAFSTENWTRPDQEVKFIMNLPVEFYDNYVPELHANNVKIQMIGETDRLPKQTFEALTKAEELTKNNTGLILNFALNYGGRAEITQALKLISQDVLDAKINPGDITEELIGNYLFTQHLPKDLRDPDLIIRTSGELRLSNFLPWQGAYSELYFTDTLWPDFDEAALQEAILAYNRR-------
General information:
TITO was launched using:
RESULT:
Template:
4Q9M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109744 for 1836 contacts (-59.8/contact) +
2D Compatibility (PS) -24802 + (NN) -13176 + (LL) 2060
1D Compatibility (HY) -28000 + (ID) 8100
Total energy: -181762.0 ( -99.00 by residue)
QMean score : 0.577
(partial model without unconserved sides chains):
PDB file :
Tito_4Q9M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Q9M-query.scw
PDB file :
Tito_Scwrl_4Q9M.pdb
: