Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIIIQRVNQASVSIEDDVVGSIEKGLVLLVGIAPEDTTEDIAYAVRKITSMRIFSDDEGKMNLSIQDIKGSVLSISQFTLFADTKKGNRPAFTGAADPVKANQFYDIFNQELANH-VSVETGQFGADMQVSLINDGPVTIVLDTKNK
1JKE Chain:C ((1-143))
MIALIQRVTRASVTVEGEVTGEIGAGLLVLLGVEKDDDEQKANRLCERVLGYRIFSDAEGKMNLNVQQAGGSVLVVSQFTLAADTERGMRPSFSKGASPDRAEALYDYFVERCRQQEMNTQTGRFAADMQVSLVNDGPVTFWLQV---
General information:
TITO was launched using:
RESULT:
Template:
1JKE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92145 for 1075 contacts (-85.7/contact) +
2D Compatibility (PS) -14871 + (NN) -4453 + (LL) 40
1D Compatibility (HY) -14000 + (ID) 3400
Total energy: -128829.0 ( -119.84 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_1JKE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JKE-query.scw
PDB file :
Tito_Scwrl_1JKE.pdb
: