Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKLTLVYISLSGNTQSFVKRLSEQLSTWHNCQVSTINIKEQNHQTFPVDQPFVALLPTYLEGGNGIDNGDQEILTIPLGDFIAAHNNVKNCIGIVGSGNRNFNNQYCLTAKQYSERFGFPMLGDFELRGTSSDVERIANIIVETLSNFKA
1RLJ Chain:A ((8-132))
NAMVQIIFDSKTGNVQRFVNKTGFQQIRKV---------DE----MDHVDTPFVLVTYTTNF---G-------QVPASTQSFLEKY--AHLLLGVAASGNKVWGDNFAKSADTISRQYQVPILHKFELSGTSKDVELFTQEVERVVTKSSA
General information:
TITO was launched using:
RESULT:
Template:
1RLJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89351 for 992 contacts (-90.1/contact) +
2D Compatibility (PS) -12788 + (NN) 870 + (LL) 284
1D Compatibility (HY) -3600 + (ID) 1650
Total energy: -106235.0 ( -107.09 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_1RLJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RLJ-query.scw
PDB file :
Tito_Scwrl_1RLJ.pdb
: