Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKKETRHQLIRSLVSETKVRTQHELRELLEKNGVSVTQATLSRDMKELNLIKVNESSDNATETYYEIHSISQKR----WEERLRFYMEDALVMLFPVQNQIVLKTLPGLAQSFGSILDSILLPEILATVCGDDTCLIIC---NNSEEAQKCFEKLSQYTPPFFFSKK
3LAP Chain:E ((18-169))
---RAGRQARIVAILSSAQVRSQNELAALLAAEGIEVTQATLSRDLEELGAVKL-RGADGGTGIYVVPEDGSPVRGVSGGTDRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTILVVAREPTTGAQLAGMFENLR-----------
General information:
TITO was launched using:
RESULT:
Template:
3LAP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89131 for 980 contacts (-91.0/contact) +
2D Compatibility (PS) -16160 + (NN) -7613 + (LL) 500
1D Compatibility (HY) -7200 + (ID) 2550
Total energy: -122154.0 ( -124.65 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_3LAP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LAP-query.scw
PDB file :
Tito_Scwrl_3LAP.pdb
: