Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MVKQGDTLSAIASQYRTTTNDITETNEIPNPDSLVVGQTIVIPIAGQFYDVKRGDTLTSIARQFNTTAAELARVNRIQLNTVLQIGFRLYIPPAPKRDIESNAYLEPRGNQVSENLQQAAREASPYLTYLGAFSFQAQRNGTLVAPPLT-NLRSITESQNTTLMMIITNLENQAFSDELGRILLNDETVKRRLLNEIVENARRYGFRDIHFDFEYLRPQDREAYNQFLREARDLFHREGLEISTALAPKTSATQQGRWYEAHDYRAHGEIVDFVVLMTYEWGYSGGPPQAVSPIGPVRDVIEYALTEMPANKIVMGQNLYGYDWTLPYTAGGTPARAVSPQQAIVIADQNNASIQYDQTAQAPFFRYTDAENRRHEVWFEDARSIQAKFNLIKELNLRGISYWKLGLSFPQNWLLLSDQFNVVKKTFR |
4S3J Chain:B ((8-430)) | -VRSGDSVYSLASKYGSTPDEIVKDNGLNPAETLVVGQALIVNTKGNNYYVQPGDSLYRISQTYNVPLASLAKVNNLSLKSILHVGQQLYVPKGTKRSVESIAYLQPSTIPIKESLVNATRAINPFLTYLAYFSFEAKRDGTLKEPTETAKIANIATQGQTIPMLVITNIENGNFSADLTSVILRDATIQNKFITNILQTAEKYGMRDIHFDFESVAPEDREAYNRFLRNVK-IRLPSGYTLSTTLVPKTSSNQKGKFFEAHDYKAQGQIVDFVVIMTYDWGWQGGPPMAISPIGPVKEVLQYAKSQMPPQKIMMGQNLYGFDWKLPFKQGNPPAKAVSSVAAVALARKYNVPIRYDFTAQAPHFNYFDENGVQHEVWFEDARSIQSKFNLMKEQGIGGISYWKIGLPFPQNWRLLVENFTITKK--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4S3J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -187726 for 3473 contacts (-54.1/contact) +
2D Compatibility (PS) -45313 + (NN) -11332 + (LL) 416
1D Compatibility (HY) -44000 + (ID) 10450
Total energy: -298405.0 ( -85.92 by residue)
QMean score : 0.501
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