Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFRIGQGFDVHQLVEGRPLIIGGIEIPYEKGLLGHSDADVLLHTVADACLGAVGEGDIGKHFPDTDPEFKDADSFKLLQHVWGIVKQKGYVLGNIDCTIIAQKPKMLPYIEDMRKRIAEGLEADVSQVNVKATTTEKLGFTGRAEGIAAQATVLIQKG
3QHD Chain:B ((24-179))
-FRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFS--------ADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVVR-
General information:
TITO was launched using:
RESULT:
Template:
3QHD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116973 for 1252 contacts (-93.4/contact) +
2D Compatibility (PS) -16178 + (NN) -7209 + (LL) 20
1D Compatibility (HY) -14000 + (ID) 4500
Total energy: -158840.0 ( -126.87 by residue)
QMean score : 0.533
(partial model without unconserved sides chains):
PDB file :
Tito_3QHD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QHD-query.scw
PDB file :
Tito_Scwrl_3QHD.pdb
: