Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEFDTIKDSKQLNGLALAYIGDAIFEVYVRHHLLKQGFTKPNDLHKKSSRIVSAKSQAEILFFLQNQSFFTEEEEAVLKRGRNAKSGTTPKNTDVQTYRYSTAFEALLGYLFLEKKEERLSQLVAEAIQFGTSGRKTNESAT
2GSL Chain:A ((5-129))
----DFSKDIRDYSGLELAFLGDAIWELEIRKYYLQFGY-NIPTLNKYVKAKVNAKYQSLIYKKII--NDLDEEFKVIGKRAKN--IKTFPRSCTVMEYKEATALEAIIGAMYLLKKEEEIKKIINIVIKGE-----------
General information:
TITO was launched using:
RESULT:
Template:
2GSL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44534 for 903 contacts (-49.3/contact) +
2D Compatibility (PS) -13481 + (NN) -9424 + (LL) 1180
1D Compatibility (HY) -8400 + (ID) 2100
Total energy: -76759.0 ( -85.00 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_2GSL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GSL-query.scw
PDB file :
Tito_Scwrl_2GSL.pdb
: