Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQQHDYVIGKNAVIETLKSDRKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLDQMVTGQHQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGL-TTTVAKASTGAIEHIPVARVTN--LARTLEEMKERGIWVVGTDASAREDFRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYEVYRKRNPVGE
4X3M Chain:B ((109-255))
------------------------------------------------------------------------------------------------PLVLVLLGLEKPGNLGAILRAADGAGADLVLVAE--GVDLFSPQVIRNSTGAVFALPVYPVAEGEAARFLEEHN---LPLVAATPEGERLYWEGDYRGGVAFLLGAEDKGLPEAWKRRAQVRVRIPMRGRADSLNVAVTAALLLYEALRQRS----
General information:
TITO was launched using:
RESULT:
Template:
4X3M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114825 for 1140 contacts (-100.7/contact) +
2D Compatibility (PS) -15837 + (NN) -7717 + (LL) 8764
1D Compatibility (HY) -12000 + (ID) 2600
Total energy: -144215.0 ( -126.50 by residue)
QMean score : 0.659
(partial model without unconserved sides chains):
PDB file :
Tito_4X3M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4X3M-query.scw
PDB file :
Tito_Scwrl_4X3M.pdb
: