Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKVFPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPGEAETILKRMGMDERKTDIDFELKETVKVIDGPFANFTGSIEEIDYDKSKVKVFVNMFGRETPVELEFTQIDKL
2JVV Chain:A ((123-180))
----------------------------------------------------------------------------------------------------------------------RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK-
General information:
TITO was launched using:
RESULT:
Template:
2JVV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27639 for 365 contacts (-75.7/contact) +
2D Compatibility (PS) -6391 + (NN) -2005 + (LL) 7476
1D Compatibility (HY) -5200 + (ID) 1600
Total energy: -35359.0 ( -96.87 by residue)
QMean score : 0.631
(partial model without unconserved sides chains):
PDB file :
Tito_2JVV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JVV-query.scw
PDB file :
Tito_Scwrl_2JVV.pdb
: