Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPTINQLIRKGRVSKVENSKSPALNKGYNSFKKEHTNVSSPQKRGVCTRVGTMTPKKPNSALRKYARVRLTNGIEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGVENRAQGRSKYGTKKPKAK
4JV5 Chain:L ((1-122))
-PTINQLVRKGREKVRKKSKVPALK-------------GAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKKPK--
General information:
TITO was launched using:
RESULT:
Template:
4JV5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21916 for 791 contacts (-27.7/contact) +
2D Compatibility (PS) -13154 + (NN) -7432 + (LL) 864
1D Compatibility (HY) -10800 + (ID) 4650
Total energy: -57088.0 ( -72.17 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_4JV5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JV5-query.scw
PDB file :
Tito_Scwrl_4JV5.pdb
: